plot_motifs: Plot filter motifs.
In mPloenzke/learnMotifs: Learn Nucleotide Motifs via Convolutions
Description
Usage
Arguments
Value
Author(s)
Description
Plot first-layer convolutional filter motifs.
Usage
1
2
plot_motifs(W_conv, ylow = 0, yhigh = 2, method = "custom",
plotheight = NULL, fl)
Arguments
W_conv
Either a list of motifs as IGMs, or a single IGM to visualize as sequence logos.
ylow
Minimum Y-axis limit.
yhigh
Maximum Y-axis limit.
method
Y-label calculation type for sequence logo plot. Either 'custom' or 'bits'.
plotheight
Height in inches for output plot.
fl
Filename to save plots to. If not provided, a plot object will be returned.
Value
A ggplot object.
Author(s)
Matthew Ploenzke, ploenzke@g.harvard.edu
mPloenzke/learnMotifs documentation built on May 27, 2019, 11:55 a.m.
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Description Usage Arguments Value Author(s)
Description
Plot first-layer convolutional filter motifs.
Usage
1 2 | plot_motifs(W_conv, ylow = 0, yhigh = 2, method = "custom",
plotheight = NULL, fl)
|
Arguments
W_conv |
Either a list of motifs as IGMs, or a single IGM to visualize as sequence logos. |
ylow |
Minimum Y-axis limit. |
yhigh |
Maximum Y-axis limit. |
method |
Y-label calculation type for sequence logo plot. Either |
plotheight |
Height in inches for output plot. |
fl |
Filename to save plots to. If not provided, a plot object will be returned. |
Value
A ggplot object.
Author(s)
Matthew Ploenzke, ploenzke@g.harvard.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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