format_filter_motifs: Format filters for motif plotting.
In mPloenzke/learnMotifs: Learn Nucleotide Motifs via Convolutions
Description
Usage
Arguments
Value
Author(s)
Description
Convert the information content motifs to a list with named rows for plotting with plot_motifs.
Usage
1
2
format_filter_motifs(conv_filters, type = "IGM", bg = c(0.25, 0.25,
0.25, 0.25))
Arguments
conv_filters
4-dimensional array containing filter weights.
type
String declaring motif representation type (either 'IGM' or 'PWM').
bg
Vector of background nucleotide probabilities (A, C, G, T)
Value
List with named motifs.
Author(s)
Matthew Ploenzke, ploenzke@g.harvard.edu
mPloenzke/learnMotifs documentation built on May 27, 2019, 11:55 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
Convert the information content motifs to a list with named rows for plotting with plot_motifs.
Usage
1 2 | format_filter_motifs(conv_filters, type = "IGM", bg = c(0.25, 0.25,
0.25, 0.25))
|
Arguments
conv_filters |
4-dimensional array containing filter weights. |
type |
String declaring motif representation type (either 'IGM' or 'PWM'). |
bg |
Vector of background nucleotide probabilities (A, C, G, T) |
Value
List with named motifs.
Author(s)
Matthew Ploenzke, ploenzke@g.harvard.edu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.