Files in mPloenzke/learnMotifs

Learn Nucleotide Motifs via Convolutions

R/activations.R R/calculate_offsets.R R/callbacks_IGM.R R/callbacks_PWM.R R/constraint_definitions.R R/data.R R/filter_motifs.R R/format_annotated_motifs.R R/helper.R R/hocomoco_utils.R R/jaspar_utils.R R/layer_denovoMotif.R R/layer_fixedMotif.R R/layer_topN_motif_hits.R R/one_hot.R R/plot_definitions.R R/regularizer_defintions.R README.Rmd README.md man/EmptyBackground.Rd man/IUPAC2Matrix.Rd man/MYC_CTCF_IRF.Rd man/PFMatrix.Rd man/calcActivationDifference.Rd man/calculate_offsets.Rd man/combo_IGM_Motifs.Rd man/combo_PWM_Motifs.Rd man/combo_constraint.Rd man/deNovo_IGM_Motifs.Rd man/deNovo_PWM_Motifs.Rd man/filter_regularizer.Rd man/find_max_length.Rd man/fixedMotif_constraint.Rd man/format_activation_motifs.Rd man/format_activations.Rd man/format_filter_motifs.Rd man/get_activations.Rd man/info_constraint.Rd man/layer_deNovo.Rd man/layer_fixedMotif.Rd man/layer_topN_max_pooling.Rd man/make_epoch_dir.Rd man/my_readHOCOMOCOMatrix.Rd man/my_readJASPARMatrix.Rd man/negative_constraint.Rd man/nonnegative_constraint.Rd man/one_hot.Rd man/one_hot_generator.Rd man/one_hot_vector.Rd man/pfm_to_igm.Rd man/pfm_to_pwm.Rd man/plot_activation_difference.Rd man/plot_filter_activations_byClass.Rd man/plot_motifs.Rd man/position_regularizer.Rd man/processHOCOMOCOText.Rd man/processJASPARText.Rd man/pwm_constraint.Rd man/restrict_to_IGM.Rd man/restrict_to_PWM.Rd man/setup_log_dir.Rd man/topN_max_pooling.Rd man/total_regularizer.Rd vignettes/learn_toy_motifs.Rmd vignettes/shotgun_JASPAR_motifs.Rmd