mvc-class: Class mvc
In madoui/metaVaR: Population Genetic Analysis of Multiple Species from Environmental Molecular Data
Description
Class mvc defines a metavariants cluster.
Slots
- name
cluster name.
- eps
epsilon value used by dbscan.
- pts
minimum points value used by dbscan.
- var
metavariants IDs.
- pop
population names.
- cov
depth of coverage matrix of biallelic loci.
- fit
fitdist objects for fitting between observed and theoritical depth of coverage in each population.
- comp
component id of the mvc.
- deg
mvc degree in mvc graph.
- weight
mvc weight.
- score
mvc score for maximum weighted independant set
- mwis
logical, if true the mvc is a maximum weighted independant set
Author(s)
momosapiens
madoui/metaVaR documentation built on June 6, 2020, 2:09 p.m.
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Description
Class mvc defines a metavariants cluster.
Slots
- name
cluster name.
- eps
epsilon value used by dbscan.
- pts
minimum points value used by dbscan.
- var
metavariants IDs.
- pop
population names.
- cov
depth of coverage matrix of biallelic loci.
- fit
fitdistobjects for fitting between observed and theoritical depth of coverage in each population.- comp
component id of the mvc.
- deg
mvc degree in mvc graph.
- weight
mvc weight.
- score
mvc score for maximum weighted independant set
- mwis
logical, if true the mvc is a maximum weighted independant set
Author(s)
momosapiens
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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