mvs: mvs

In madoui/metaVaR: Population Genetic Analysis of Multiple Species from Environmental Molecular Data

Description

mvs

Usage

mvs(
  id = "",
  freq = data.frame(),
  gFst = 0,
  gLK = 0,
  pwFst = data.frame(),
  name = "",
  eps = 0,
  pts = 0,
  var = c(),
  pop = c(),
  cov = data.frame(),
  fit = list(),
  comp = 0,
  deg = 0,
  weight = 0,
  score = 0,
  mwis = FALSE
)

Arguments

id	mvs id
freq	allele frequency
gFst	global Fst
gLK	global LK
pwFst	pairwise-Fst
name	cluster name.
eps	epsilon value used by dbscan.
pts	minimum points value used by dbscan.
var	metavariants IDs.
pop	population names.
cov	depth of coverage matrix of biallelic loci.
fit	fitdist object for fitting between observed and theoritical depth of coverage.
comp	component id of the mvc.
deg	mvc degree in the mvc graph
weight	mvc weight
score	mvc score for maximum weighted independant set
mwis	logical, set to true if the mvc is a maximum weighted independant set

madoui/metaVaR documentation built on June 6, 2020, 2:09 p.m.