setMvs-methods: setMvs

In madoui/metaVaR: Population Genetic Analysis of Multiple Species from Environmental Molecular Data

Description

set mvs attributes

Usage

setMvs(x, id = x@id, freq = x@freq, gFst = x@gFst, gLK = x@gLK,
  pwFst = x@pwFst, name = x@name, eps = x@eps, pts = x@pts,
  var = x@var, pop = x@pop, cov = x@cov, fit = x@fit,
  comp = x@comp, deg = x@deg, weight = x@weight, score = x@score,
  mwis = x@mwis)

## S4 method for signature 'mvs'
setMvs(x, id = x@id, freq = x@freq, gFst = x@gFst,
  gLK = x@gLK, pwFst = x@pwFst, name = x@name, eps = x@eps,
  pts = x@pts, var = x@var, pop = x@pop, cov = x@cov,
  fit = x@fit, comp = x@comp, deg = x@deg, weight = x@weight,
  score = x@score, mwis = x@mwis)

Arguments

x	an object of class mvc.
id	mvs name.
freq	allele frequencies
gFst	global Fst
gLK	global LK
pwFst	pairwise-Fst
name	cluster name.
eps	epsilon value used by dbscan.
pts	minimum points value used by dbscan.
var	metavariants IDs.
pop	population names.
cov	depth of coverage matrix of biallelic loci.
fit	fitdist object for fitting between observed and theoritical depth of coverage.
comp	component id of the mvc.
deg	mvc degree in the mvc graph
weight	mvc weight
score	mvc score for maximum weighted independant set
mwis	logical, if true the mvc is a maximum weighted independant set
mvs	an object of class mvs.

Value

an object of class mvs.

madoui/metaVaR documentation built on June 6, 2020, 2:09 p.m.