Files in maize-genetics/bioconductor_test
R front-end for TASSEL
DESCRIPTION
LICENSE
NAMESPACE
R/AllClasses.R
R/AnalysisAssociationFunctions.R
R/AnalysisAssociationVisFunctions.R
R/AnalysisRelatednessFunctions.R
R/FilterFunctions.R
R/GenotypePhenotypeFunctions.R
R/GenotypeTableFunctions.R
R/LoggingSupport.R
R/PhenotypeFunctions.R
R/PositionListFunctions.R
R/TaxaListFunctions.R
R/zzz.R
README.md
inst/extdata/maize_chr9_10thin40000.recode.vcf
inst/extdata/mdp_genotype.hmp.txt
inst/extdata/mdp_kinship.txt
inst/extdata/mdp_phenotype.txt
inst/extdata/mdp_population_structure.txt
inst/extdata/mdp_traits.txt
inst/extdata/mdp_traits_nomissing.txt
inst/java/lib/ahocorasick-0.2.4.jar
inst/java/lib/biojava-alignment-4.0.0.jar
inst/java/lib/biojava-core-4.0.0.jar
inst/java/lib/biojava-phylo-4.0.0.jar
inst/java/lib/colt-1.2.0.jar
inst/java/lib/commons-codec-1.10.jar
inst/java/lib/commons-math3-3.4.1.jar
inst/java/lib/ejml-0.23.jar
inst/java/lib/forester-1.038.jar
inst/java/lib/guava-22.0.jar
inst/java/lib/htsjdk-2.14.0.jar
inst/java/lib/itextpdf-5.1.0.jar
inst/java/lib/javax.json-1.0.4.jar
inst/java/lib/jcommon-1.0.23.jar
inst/java/lib/jfreechart-1.0.19.jar
inst/java/lib/jfreesvg-3.2.jar
inst/java/lib/jhdf5-14.12.5.jar
inst/java/lib/json-simple-1.1.1.jar
inst/java/lib/junit-4.10.jar
inst/java/lib/libTasselBlas.dylib
inst/java/lib/log4j-1.2.13.jar
inst/java/lib/mail-1.4.jar
inst/java/lib/postgresql-9.4-1201.jdbc41.jar
inst/java/lib/slf4j-api-1.7.10.jar
inst/java/lib/slf4j-simple-1.7.10.jar
inst/java/lib/snappy-java-1.1.1.6.jar
inst/java/lib/sqlite-jdbc-3.8.5-pre1.jar
inst/java/lib/trove-3.0.3.jar
inst/java/sTASSEL.jar
man/TasselGenotypePhenotype-class.Rd
man/assocModelFitter.Rd
man/distanceMatrix.Rd
man/distanceToRMatrix.Rd
man/filterGenotypeTableSites.Rd
man/filterGenotypeTableTaxa.Rd
man/getPhenotypeDF.Rd
man/getSumExpFromGenotypeTable.Rd
man/kinshipMatrix.Rd
man/kinshipToRMatrix.Rd
man/manhattanPlot.Rd
man/readGenotypePhenotype.Rd
man/readGenotypeTableFromPath.Rd
man/readPhenotypeFromDataFrame.Rd
man/readPhenotypeFromPath.Rd
man/startLogger.Rd
rTASSEL_log
rtassel.Rproj
vignettes/rtassel_walkthrough.R
vignettes/rtassel_walkthrough.Rmd
