filterGenotypeTableTaxa: Filter genotype table by taxa

In maize-genetics/bioconductor_test: R front-end for TASSEL

Description

This function will filter R objects of TasselGenotypePhenotype class containing genotype tables. The parameters for this function are derived from TASSEL's FilterTaxaBuilder plugin.

Usage

filterGenotypeTableTaxa(tasObj, minNotMissing = 0, minHeterozygous = 0,
  maxHeterozygous = 1)

Arguments

tasObj	An object of class TasselGenotypePenotype.
minNotMissing	Minimum proportion of sites not unknown to pass this filter. Value can be between 0.0 and 1.0.
minHeterozygous	Minimum proportion of sites that are heterozygous. Value can be between 0.0 and 1.0.
maxHeterozygous	Maximum proportion of sites that are heterozygous. Value can be between 0.0 and 1.0.

Value

Returns an object of TasselGenotypePhenotype class.

maize-genetics/bioconductor_test documentation built on Nov. 4, 2019, 5:19 p.m.