Files in maize-genetics/bioconductor_test

R front-end for TASSEL

DESCRIPTION

LICENSE

NAMESPACE

R/AllClasses.R R/AnalysisAssociationFunctions.R R/AnalysisAssociationVisFunctions.R R/AnalysisRelatednessFunctions.R R/FilterFunctions.R R/GenotypePhenotypeFunctions.R R/GenotypeTableFunctions.R R/LoggingSupport.R R/PhenotypeFunctions.R R/PositionListFunctions.R R/TaxaListFunctions.R R/zzz.R README.md

inst/extdata/maize_chr9_10thin40000.recode.vcf

inst/extdata/mdp_genotype.hmp.txt

inst/extdata/mdp_kinship.txt

inst/extdata/mdp_phenotype.txt

inst/extdata/mdp_population_structure.txt

inst/extdata/mdp_traits.txt

inst/extdata/mdp_traits_nomissing.txt

inst/java/lib/ahocorasick-0.2.4.jar

inst/java/lib/biojava-alignment-4.0.0.jar

inst/java/lib/biojava-core-4.0.0.jar

inst/java/lib/biojava-phylo-4.0.0.jar

inst/java/lib/colt-1.2.0.jar

inst/java/lib/commons-codec-1.10.jar

inst/java/lib/commons-math3-3.4.1.jar

inst/java/lib/ejml-0.23.jar

inst/java/lib/forester-1.038.jar

inst/java/lib/guava-22.0.jar

inst/java/lib/htsjdk-2.14.0.jar

inst/java/lib/itextpdf-5.1.0.jar

inst/java/lib/javax.json-1.0.4.jar

inst/java/lib/jcommon-1.0.23.jar

inst/java/lib/jfreechart-1.0.19.jar

inst/java/lib/jfreesvg-3.2.jar

inst/java/lib/jhdf5-14.12.5.jar

inst/java/lib/json-simple-1.1.1.jar

inst/java/lib/junit-4.10.jar

inst/java/lib/libTasselBlas.dylib

inst/java/lib/log4j-1.2.13.jar

inst/java/lib/mail-1.4.jar

inst/java/lib/postgresql-9.4-1201.jdbc41.jar

inst/java/lib/slf4j-api-1.7.10.jar

inst/java/lib/slf4j-simple-1.7.10.jar

inst/java/lib/snappy-java-1.1.1.6.jar

inst/java/lib/sqlite-jdbc-3.8.5-pre1.jar

inst/java/lib/trove-3.0.3.jar

inst/java/sTASSEL.jar

man/TasselGenotypePhenotype-class.Rd man/assocModelFitter.Rd man/distanceMatrix.Rd man/distanceToRMatrix.Rd man/filterGenotypeTableSites.Rd man/filterGenotypeTableTaxa.Rd man/getPhenotypeDF.Rd man/getSumExpFromGenotypeTable.Rd man/kinshipMatrix.Rd man/kinshipToRMatrix.Rd man/manhattanPlot.Rd man/readGenotypePhenotype.Rd man/readGenotypeTableFromPath.Rd man/readPhenotypeFromDataFrame.Rd man/readPhenotypeFromPath.Rd man/startLogger.Rd

rTASSEL_log

rtassel.Rproj

vignettes/rtassel_walkthrough.R vignettes/rtassel_walkthrough.Rmd

maize-genetics/bioconductor_test documentation built on Nov. 4, 2019, 5:19 p.m.