Man pages for maize-genetics/bioconductor_test
R front-end for TASSEL
| assocModelFitter | R interface for TASSEL's association methods |
| distanceMatrix | Create a TASSEL distance matrix |
| distanceToRMatrix | Convert TASSEL distance matrix object to an R matrix class |
| filterGenotypeTableSites | Filter genotype table by sites |
| filterGenotypeTableTaxa | Filter genotype table by taxa |
| getPhenotypeDF | Get an R/'tibble' phenotype data frame from TASSEL object |
| getSumExpFromGenotypeTable | Create Summarized Experiment from a TASSEL Genotype Table |
| kinshipMatrix | Create a TASSEL kinship matrix |
| kinshipToRMatrix | Convert TASSEL kinship matrix object to an R matrix class |
| manhattanPlot | Create Manhattan plot from rTASSEL association output |
| readGenotypePhenotype | Wrapper function of TasselGenotypePhenotype class for... |
| readGenotypeTableFromPath | Wrapper function of TasselGenotypePhenotype class for... |
| readPhenotypeFromDataFrame | Wrapper function of TasselGenotypePhenotype class for... |
| readPhenotypeFromPath | Wrapper function of TasselGenotypePhenotype class for... |
| startLogger | Start TASSEL logging information |
| TasselGenotypePhenotype-class | TasselGenotypePhenotype Class |
