plotDot()
functionDEMO
method endpoint returning incorrect dimensional data
for specific Maize PHGv1 methodsplotDot()
.anchorspro
filesgvcfMetrics()
PHGServerCon
PHGLocalCon
HaplotypeGraph
PHGMethod()
showPHGMethods()
readSamples()
readRefRanges()
readHaplotypeIds()
readPHGDataSet()
numHaploPerRefRange()
calcMutualInfo()
plotGraph()
plotMutualInfo()
availablePHGMethods()
:"DEMO"
method parameter for PHGMethod()
constructor:PHGMethod("DEMO")
plotGraph()
visNetwork
object for a given section of PHG data filtered
by reference rangetaxaByNode()
tibble
object of taxa IDs that are found
in a group of haplotype IDs for a given set of reference
range IDsstartLogger()
)khttp
client in PHG jarBrapiCon
BrapiConPHG
readRefRanges()
readSamples()
readTable()
readPHGDatasetFromBrapi()
filterRefRanges()
filterSamples()
serverInfo()
availablePHGMethods()
graphBuilder()
buildType
- do you want the graph built from paths or haplotypes?plotNumHaplo()
and plotMutualInfo()
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