Man pages for maize-genetics/rTASSEL
R Front-End for TASSEL

assocModelFitterR interface for TASSEL's association methods
distanceMatrixCreate a TASSEL distance matrix
distanceToRMatrixConvert TASSEL distance matrix object to an R matrix class
exportGenotypeTableExport Genotype Table to Disk
filterGenotypeTableSitesFilter genotype table by sites
filterGenotypeTableTaxaFilter genotype table by taxa
genomicPredictionR interface for TASSEL's genomic prediction capabilities
getPhenotypeDFGet an R/'DataFrame' phenotype data frame from TASSEL object
getSumExpFromGenotypeTableCreate Summarized Experiment from a TASSEL Genotype Table
kinshipMatrixCreate a TASSEL kinship matrix
kinshipToRMatrixConvert TASSEL kinship matrix object to an R matrix class
ldJavaAppLinkage desequilibrium visualization application
ldPlotLinkage disequilibrium plot
linkageDiseqCalculate linkage disequilibrium from an rTASSEL genotype...
manhattanPlotCreate Manhattan plot from rTASSEL association output
readGenotypePhenotypeWrapper function of TasselGenotypePhenotype class for...
readGenotypeTableFromPathWrapper function of TasselGenotypePhenotype class for...
readPhenotypeFromDataFrameWrapper function of TasselGenotypePhenotype class for...
readPhenotypeFromPathWrapper function of TasselGenotypePhenotype class for...
startLoggerStart TASSEL logging information
TasselGenotypePhenotype-classTasselGenotypePhenotype Class
maize-genetics/rTASSEL documentation built on March 11, 2021, 12:52 p.m.