getSumExpFromGenotypeTable: Create Summarized Experiment from a TASSEL Genotype Table
In maize-genetics/rTASSEL: R Front-End for TASSEL
View source: R/genotype_table_functions.R
getSumExpFromGenotypeTable R Documentation
Create Summarized Experiment from a TASSEL Genotype Table
Description
This function will generate an object of
SummarizedExperiment class for marker data derived from a
TasselGenotypePhenotype class object.
Usage
getSumExpFromGenotypeTable(tasObj, coerceDosageToInt = TRUE, verbose = FALSE)
Arguments
tasObj
An object of class TasselGenotypePenotype.
coerceDosageToInt
Should dosage array be returned as integer
values? If FALSE, dosage array will be returned as type
raw byte values. Returning raw byte values. Will greatly
save on memory. Defaults to TRUE.
verbose
Should messages be displayed to console? Defaults to
FALSE.
Value
Returns a SummarizedExperiment of TASSEL genotype data.
maize-genetics/rTASSEL documentation built on Nov. 13, 2023, 7:18 a.m.
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View source: R/genotype_table_functions.R
| getSumExpFromGenotypeTable | R Documentation |
Create Summarized Experiment from a TASSEL Genotype Table
Description
This function will generate an object of
SummarizedExperiment class for marker data derived from a
TasselGenotypePhenotype class object.
Usage
getSumExpFromGenotypeTable(tasObj, coerceDosageToInt = TRUE, verbose = FALSE)
Arguments
tasObj |
An object of class |
coerceDosageToInt |
Should dosage array be returned as |
verbose |
Should messages be displayed to console? Defaults to
|
Value
Returns a SummarizedExperiment of TASSEL genotype data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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