createTree: R interface for TASSEL's tree creation methods
In maize-genetics/rTASSEL: R Front-End for TASSEL
View source: R/analysis_phylogeny_functions.R
createTree R Documentation
R interface for TASSEL's tree creation methods
Description
This function acts as a wrapper for TASSEL's
CreateTreePlugin.
Usage
createTree(tasObj, clustMethod = c("Neighbor_Joining", "UPGMA"))
Arguments
tasObj
An object of class TasselGenotypePenotype.
clustMethod
What clustering method should be used? Current options
are UGMA and Neighbor_Joining. Defaults to
Neighbor_Joining.
Value
Returns a phylo tree object. See the
[ape]https://cran.r-project.org/web/packages/ape/ape.pdf package
for further details.
maize-genetics/rTASSEL documentation built on Nov. 13, 2023, 7:18 a.m.
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View source: R/analysis_phylogeny_functions.R
| createTree | R Documentation |
R interface for TASSEL's tree creation methods
Description
This function acts as a wrapper for TASSEL's
CreateTreePlugin.
Usage
createTree(tasObj, clustMethod = c("Neighbor_Joining", "UPGMA"))
Arguments
tasObj |
An object of class |
clustMethod |
What clustering method should be used? Current options
are |
Value
Returns a phylo tree object. See the
[ape]https://cran.r-project.org/web/packages/ape/ape.pdf package
for further details.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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