kinshipMatrix: Create a TASSEL kinship matrix
In maize-genetics/rTASSEL: R Front-End for TASSEL

kinshipMatrix

R Documentation

Create a TASSEL kinship matrix

This function will calculate a kinship matrix using TASSEL's Kinship plugin and respective parameters.

kinshipMatrix(
  tasObj,
  method = "Centered_IBS",
  maxAlleles = 6,
  algorithmVariation = "Observed_Allele_Freq"
)

`tasObj`	An object of class `TasselGenotypePenotype`.
`method`	A Kinship method. Defaults to `Centered_IBS`. Other options include `Normalized_IBS`, `Dominance_Centered_IBS`, and `Dominance_Normalized_IBS`.
`maxAlleles`	Maximum number of alleles. Can be within the range of `2` to `6`.
`algorithmVariation`	Algorithm variation. If `Dominance_Centered_IBS` is selected, users can switch between `Observed_Allele_Freq` and `Proportion_Heterozygous`.