Man pages for mariodejung/samplesubmission
Sample Submission User Web Interface
| apply_submit | Perform a try to submit the filled form contains validation... |
| createSummaryFileOfFastaFiles | Creates a csv file with containing a summary of all fasta... |
| extrProtIdsFromFasta | tries to extract the protein IDs (located in fasta headers)... |
| fillMqparTemplate | fills a template mqpar string with the given infos |
| getFilenamesFromDBnames | extracts databases file paths on the basis of selected... |
| getProtIdRegexFromFileName | tries to determine an appropriate regex for Protein ID... |
| markRequiredInput | Marks an input field as required appends an asterix to the... |
| normalizeFastaSeq | replaces whitespaces in the headers replaces whitespaces with... |
| preparePathForSub | normalize and prepare one or more paths for substitution into... |
| removeAllRequiredMarks | This function will remove all marks being set in... |
| showAndPrintHtmlFile | opens a new browser window or tab where the html will be... |
| submitCompletedForm | gather all necessary inputs and uploaded files, enriches them... |
| summarizeBarcodes | summarize the barcodes into one named list names are the... |
| validateBarCodes | performs a validation check on the barcodes fields |
| Validated | creates a status object (named list) comfort function |
| validateDataBases | performs a validation on databases input fields |
| validateFastaFiles | validates whether the files are valid fasta files uses... |
| validateFastaInputs | validates input fields related to uploaded fasta files |
| validateFastaSequences | validates a fasta sequence string |
| validateGeneralSettings | performs a validation on miscellaneous settings |
| validateInputValues | performs a validation on the whole web-form |
| validateUserInformation | performs a validation on user infos fields |
