createSummaryFileOfFastaFiles: Creates a csv file with containing a summary of all fasta...

In mariodejung/samplesubmission: Sample Submission User Web Interface

Description

Creates a csv file with containing a summary of all fasta files found in the directory tries to extract species names from the file names

Usage

createSummaryFileOfFastaFiles(fasta_files_path = ".",
  out_file = "Available_species_DBs.csv",
  file_name_pattern = "\\.fasta$")

Arguments

fasta_files_path	directory path vector for searching the fasta files
out_file	file name (or path) for the summary output file. If NULL no file will be written
file_name_pattern	file name pattern to filter the file names

Value

data frame with the summary

Examples

## Not run: 
createSummaryFileOfFastaFiles()
createSummaryFileOfFastaFiles("fasta_dir", "summary.csv", "(HUMAN|YEAST).*\\.fasta$")

## End(Not run)

mariodejung/samplesubmission documentation built on May 3, 2019, 1:34 p.m.