extrProtIdsFromFasta: tries to extract the protein IDs (located in fasta headers)...
In mariodejung/samplesubmission: Sample Submission User Web Interface
Description
Usage
Arguments
Value
Examples
Description
tries to extract the protein IDs (located in fasta headers) from fasta file
Usage
1
extrProtIdsFromFasta(fasta_file, sub_pattern = NULL)
Arguments
fasta_file
path to a fasta file
sub_pattern
optionally, pattern to match the protein ID
Value
a character vector of protein IDs
Examples
1
2
3
4
## Not run:
extrProtIdsFromFasta("HUMAN_DB.fasta", ">([^ ]+)")
## End(Not run)
mariodejung/samplesubmission documentation built on May 3, 2019, 1:34 p.m.
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Description Usage Arguments Value Examples
Description
tries to extract the protein IDs (located in fasta headers) from fasta file
Usage
1 | extrProtIdsFromFasta(fasta_file, sub_pattern = NULL)
|
Arguments
fasta_file |
path to a fasta file |
sub_pattern |
optionally, pattern to match the protein ID |
Value
a character vector of protein IDs
Examples
1 2 3 4 | ## Not run:
extrProtIdsFromFasta("HUMAN_DB.fasta", ">([^ ]+)")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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