getProtIdRegexFromFileName: tries to determine an appropriate regex for Protein ID...
In mariodejung/samplesubmission: Sample Submission User Web Interface
Description
Usage
Arguments
Value
Examples
Description
tries to determine an appropriate regex for Protein ID extraction from fasta headers
on the basis of file names
Usage
1
getProtIdRegexFromFileName(file_name, default_pattern = ">([^ ]+)")
Arguments
file_name
one or more(vector) file names
default_pattern
regex wich is used in case of no recognition
Value
a vector of regex
Examples
1
getProtIdRegexFromFileName("Uniprot_Human_DB.fasta")
mariodejung/samplesubmission documentation built on May 3, 2019, 1:34 p.m.
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Description Usage Arguments Value Examples
Description
tries to determine an appropriate regex for Protein ID extraction from fasta headers on the basis of file names
Usage
1 | getProtIdRegexFromFileName(file_name, default_pattern = ">([^ ]+)")
|
Arguments
file_name |
one or more(vector) file names |
default_pattern |
regex wich is used in case of no recognition |
Value
a vector of regex
Examples
1 | getProtIdRegexFromFileName("Uniprot_Human_DB.fasta")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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