Description Usage Arguments Value Author(s) See Also Examples
View source: R/OrthologousCluster.R
Given a query, fetch the alignment of its orthologous cluster from gOrtholog website
1 2 3 4 | GetAlignment(query.id = query.id, id.type = c("entrez_gene_id",
"ensembl_pep_id", "ensembl_gene_id"), taxid = taxid, clusterid.cidx = 1,
taxid.cidx = 2, id.cidx = 3, no.id = NA, diagnose = FALSE,
url.base = "http://resdev.gene.com/gOrtholog/")
|
query.id |
query IDs |
id.type |
type.id which type of IDs are used: Entrez Gene ID, Ensembl gene ID, Ensembl peptide ID |
taxid |
query species |
an object of class AAMultipleAlignment (see
MultipleAlignment-class
)
Mark J Chen chenj99@gene.com
1 | ptpn4a1.aln <- GetAlignment(query.id="ENSP00000359685", id.type="ensembl_pep_id")
|
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