GetClusterID: Get orthologous cluster ID

In markgene/gorthoR: R package

Description

Find orthologous cluster given gene/protein IDs

Usage

GetClusterID(query.id = query.id, id.type = c("entrez_gene_id",
  "ensembl_pep_id", "ensembl_gene_id"), taxid = taxid, clusterid.cidx = 1,
  taxid.cidx = 2, id.cidx = 3, no.id = NA, diagnose = FALSE)

Arguments

query.id	query IDs
id.type	type.id which type of IDs are used: Entrez Gene ID, Ensembl gene ID, Ensembl peptide ID
taxid	query species

Value

a vector of orthologous cluster IDs (NAs for failed query IDs)

Author(s)

Mark J Chen [e-mail]

Examples

GetClusterID(query.id=c("YIL106W", "YOR358W"), id.type="ensembl_pep_id")
GetClusterID(query.id=c(854700, 854540), id.type="entrez_gene_id")

markgene/gorthoR documentation built on May 21, 2019, noon