Description Usage Arguments Value Author(s) Examples
View source: R/OrthologousCluster.R
Find orthologous cluster given gene/protein IDs
1 2 3 | GetClusterID(query.id = query.id, id.type = c("entrez_gene_id",
"ensembl_pep_id", "ensembl_gene_id"), taxid = taxid, clusterid.cidx = 1,
taxid.cidx = 2, id.cidx = 3, no.id = NA, diagnose = FALSE)
|
query.id |
query IDs |
id.type |
type.id which type of IDs are used: Entrez Gene ID, Ensembl gene ID, Ensembl peptide ID |
taxid |
query species |
a vector of orthologous cluster IDs (NAs for failed query IDs)
Mark J Chen chenj99@gene.com
1 2 | GetClusterID(query.id=c("YIL106W", "YOR358W"), id.type="ensembl_pep_id")
GetClusterID(query.id=c(854700, 854540), id.type="entrez_gene_id")
|
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