Tx2Gene: Aggregate Transcript Counts to Gene-Level Counts
In markziemann/getDEE2: Programmatic access to the DEE2 RNA expression dataset
Tx2Gene R Documentation
Aggregate Transcript Counts to Gene-Level Counts
Description
This function converts Kallisto transcript-level expression estimates to
gene-level estimates. Counts for each transcript are summed to get an
aggregated gene level score.
Usage
Tx2Gene(x)
Arguments
x
a getDEE2 object.
Value
a dataframe of gene expression counts.
Examples
x <- getDEE2("scerevisiae",c("SRR1755149","SRR1755150"),legacy=TRUE)
x <- Tx2Gene(x)
markziemann/getDEE2 documentation built on Jan. 16, 2025, midnight
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| Tx2Gene | R Documentation |
Aggregate Transcript Counts to Gene-Level Counts
Description
This function converts Kallisto transcript-level expression estimates to gene-level estimates. Counts for each transcript are summed to get an aggregated gene level score.
Usage
Tx2Gene(x)
Arguments
x |
a getDEE2 object. |
Value
a dataframe of gene expression counts.
Examples
x <- getDEE2("scerevisiae",c("SRR1755149","SRR1755150"),legacy=TRUE)
x <- Tx2Gene(x)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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