query_bundles: Query whether a project bundle is available from DEE2

Description Usage Arguments Value Examples

View source: R/getDEE2.R

Description

This function sends a query to check whether a dataset is available or not.

Usage

1
query_bundles(species, query, col, bundles = NULL)

Arguments

species

A character string matching a species of interest.

query

A character string, such as the SRA project accession number or the GEO series accession number

col

the column name to be queried, usually "SRP_accession" for SRA project accession or "GSE_accession" for GEO series accession.

bundles

optional table of previously downloaded bundles.

Value

a list of datasets that are present and absent.

Examples

1
query_bundles("celegans", c("SRP133403","SRP133439"), col = "SRP_accession")

markziemann/getDEE2 documentation built on Dec. 21, 2021, 2:48 p.m.