se: Create summarizedExperiment object

In markziemann/getDEE2: Programmatic access to the DEE2 RNA expression dataset

Description

This function creates a SummarizedExperiment object from a legacy getDEE2 dataset

Usage

se(x, counts = "GeneCounts")

Arguments

x	a getDEE2 object.
counts	select "GeneCounts" for STAR based gene counts, "TxCounts" for kallisto transcript level counts or "Tx2Gene" for transcript counts aggregated to gene level. Default is "GeneCounts"

Value

a SummarizedExperiment object

Examples

x <- getDEE2("ecoli",c("SRR1613487","SRR1613488"),legacy=TRUE)
y <- se(x)

markziemann/getDEE2 documentation built on Dec. 21, 2021, 2:48 p.m.