queryDEE2: Query Whether a DEE2 Dataset is Available

Description Usage Arguments Value Examples

View source: R/getDEE2.R

Description

This function sends a query to check whether a dataset is available or not.

Usage

1
queryDEE2(species, SRRvec, metadata = NULL, ...)

Arguments

species

A character string matching a species of interest.

SRRvec

A character string or vector thereof of SRA run accession numbers.

metadata

optional R object of DEE2 metadata to query.

...

Additional parameters to be passed to download.file.

Value

a list of datasets that are present and absent.

Examples

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x <- queryDEE2("ecoli",c("SRR1067773","SRR5350513"))

markziemann/getDEE2 documentation built on Dec. 21, 2021, 2:48 p.m.