DAoverview: Table and plot of total number of altered and not altered...

In martahidalgo/hipathia: HiPathia: High-throughput Pathway Analysis

Table and plot of total number of altered and not altered nodes, paths and functions (Uniprot keywords and/or GO terms, if present).

Description

Table and plot of total number of altered and not altered nodes, paths and functions (Uniprot keywords and/or GO terms, if present).

Usage

DAoverview(DAdata, conf.level = 0.05, adjust = TRUE, colors = "hiro")

Arguments

DAdata	List of comparison results, returned by function DAcomp.
conf.level	Numeric, cut off for significance. Default is 0.05.
adjust	Boolean, whether to adjust the p.value with Benjamini-Hochberg FDR method. Default is TRUE.
colors	String with the color scheme or vector of colors to be used. See define_colors for available options. Default is "hiro".

Value

Plot and tibble including the number of total, altered, UP- and DOWN-regulated features for nodes, paths and functions if present.

Examples

data(DAdata)
DAoverview(DAdata)

martahidalgo/hipathia documentation built on Jan. 12, 2023, 1:44 p.m.