get_highest_sig_ancestor: Get highest common GO ancestor of GO annotations

In martahidalgo/hipathia: HiPathia: High-throughput Pathway Analysis

Get highest common GO ancestor of GO annotations

Description

Get highest common GO ancestor of GO annotations

Usage

get_highest_sig_ancestor(
  go_terms,
  go_comp,
  metaginfo,
  unique = TRUE,
  pval = 0.05
)

Arguments

go_terms	GO terms for which the highest common ancestors are to be looked for.
go_comp	Wilcoxon comparison of the matrix of GO values as returned by do_wilcoxon.
metaginfo	Pathways object
unique	Boolean, whether to return only one highest significant GO ancestor or all of them. By default, TRUE.
pval	P-value cut-off. Default values is set to 0.05.

Value

highest common ancestors

#@export

martahidalgo/hipathia documentation built on Jan. 12, 2023, 1:44 p.m.