DAtop: Lists and plots the top 'n' altered nodes, paths and...

In martahidalgo/hipathia: HiPathia: High-throughput Pathway Analysis

Lists and plots the top n altered nodes, paths and functions (Uniprot keywords and/or GO terms, if present).

Description

Lists and plots the top n altered nodes, paths and functions (Uniprot keywords and/or GO terms, if present).

Usage

DAtop(DAdata, n = 10, conf.level = 0.05, adjust = TRUE, colors = "hiro")

Arguments

DAdata	List of comparison results, returned by function DAcomp.
n	Number of top features to show.
conf.level	Numeric, cut off for significance. Default is 0.05.
adjust	Boolean, whether to adjust the p.value with Benjamini-Hochberg FDR method. Default is TRUE.
colors	String with the color scheme or vector of colors to be used. See define_colors for available options. Default is "hiro".

Value

Plot and list of tables including top n altered features for nodes, paths and functions if present.

Examples

data(DAdata)
topDA(DAdata)

martahidalgo/hipathia documentation built on Jan. 12, 2023, 1:44 p.m.