Files in martingarrido/biokit
Toolkit for the automatic analysis of omics data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/add_status.R
R/create_contrasts.R
R/create_design.R
R/data.R
R/data_visualization.R
R/edger_pairwise_comparison.R
R/functional_analysis.R
R/generic_pairwise_comparison.R
R/limma_pairwise_comparison.R
R/misc_utils.R
R/over_representation_analysis.R
R/tmm_normalization.R
R/translate_matrix.R
R/validators.R
README.Rmd
README.md
_pkgdown.yml
biokit.Rproj
data/humanHallmarks.rda
data/sarsCovData.rda
docs/404.html
docs/LICENSE-text.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/addStatusByCutoff.html
docs/reference/addStatusByRank.html
docs/reference/autoBiokitAnalysis.html
docs/reference/autoEdgerComparison.html
docs/reference/autoLimmaComparison.html
docs/reference/autoPairwiseMatrixTest.html
docs/reference/contrastsFromDesign.html
docs/reference/countsToTmm.html
docs/reference/createPairwiseContrasts.html
docs/reference/defaultLogFc.html
docs/reference/designFromSampInfo.html
docs/reference/edgerDfFromContrasts.html
docs/reference/figures/biokit_logo.svg
docs/reference/figures/logo.svg
docs/reference/figures/unnamed-chunk-10-1.png
docs/reference/figures/unnamed-chunk-3-1.png
docs/reference/figures/unnamed-chunk-4-1.png
docs/reference/figures/unnamed-chunk-5-1.png
docs/reference/figures/unnamed-chunk-6-1.png
docs/reference/figures/unnamed-chunk-7-1.png
docs/reference/figures/unnamed-chunk-8-1.png
docs/reference/figures/unnamed-chunk-9-1.png
docs/reference/fisherExactTest.html
docs/reference/gseaFromStats.html
docs/reference/gseaPlot.html
docs/reference/heatmapPlot.html
docs/reference/humanHallmarks.html
docs/reference/index.html
docs/reference/limmaDfFromContrasts.html
docs/reference/messageMappingInfo.html
docs/reference/nsTestPValue.html
docs/reference/nsTestT.html
docs/reference/oraFromStats.html
docs/reference/overRepresentationAnalysis.html
docs/reference/pairwiseMatrixTest.html
docs/reference/pcaPlot.html
docs/reference/sarsCovMat.html
docs/reference/sarsCovSampInfo.html
docs/reference/singleMatrixTest.html
docs/reference/splitFunMerge.html
docs/reference/translateMatrix.html
docs/reference/translateMatrixWithDb.html
docs/reference/translateSE.html
docs/reference/translateSEWithDb.html
docs/reference/validateMatrix.html
docs/reference/validateSampInfo.html
docs/reference/validateTranslatorDf.html
docs/reference/violinPlot.html
docs/reference/volcanoPlot.html
docs/sitemap.xml
man/addStatusByCutoff.Rd
man/addStatusByRank.Rd
man/autoEdgerComparison.Rd
man/autoLimmaComparison.Rd
man/autoPairwiseMatrixTest.Rd
man/contrastsFromDesign.Rd
man/countsToTmm.Rd
man/createPairwiseContrasts.Rd
man/defaultLogFc.Rd
man/designFromSampInfo.Rd
man/edgerDfFromContrasts.Rd
man/figures/logo.svg
man/figures/unnamed-chunk-10-1.png
man/figures/unnamed-chunk-3-1.png
man/figures/unnamed-chunk-4-1.png
man/figures/unnamed-chunk-5-1.png
man/figures/unnamed-chunk-6-1.png
man/figures/unnamed-chunk-7-1.png
man/figures/unnamed-chunk-8-1.png
man/figures/unnamed-chunk-9-1.png
man/fisherExactTest.Rd
man/gseaFromStats.Rd
man/gseaPlot.Rd
man/heatmapPlot.Rd
man/humanHallmarks.Rd
man/limmaDfFromContrasts.Rd
man/messageMappingInfo.Rd
man/nsTestPValue.Rd
man/nsTestT.Rd
man/oraFromStats.Rd
man/overRepresentationAnalysis.Rd
man/pairwiseMatrixTest.Rd
man/pcaPlot.Rd
man/sarsCovMat.Rd
man/sarsCovSampInfo.Rd
man/splitFunMerge.Rd
man/translateMatrix.Rd
man/translateMatrixWithDb.Rd
man/validateMatrix.Rd
man/validateSampInfo.Rd
man/validateTranslatorDf.Rd
man/violinPlot.Rd
man/volcanoPlot.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/test_integrated_analysis.R
tests/testthat/test_tmm_normalization.R
tests/testthat/test_translate_matrix.R
tests/testthat/test_validators.R
