Files in martingarrido/biokit
Toolkit for the automatic analysis of omics data

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/add_status.R R/create_contrasts.R R/create_design.R R/data.R R/data_visualization.R R/edger_pairwise_comparison.R R/functional_analysis.R R/generic_pairwise_comparison.R R/limma_pairwise_comparison.R R/misc_utils.R R/over_representation_analysis.R R/tmm_normalization.R R/translate_matrix.R R/validators.R README.Rmd README.md
_pkgdown.yml
biokit.Rproj
data/humanHallmarks.rda
data/sarsCovData.rda
docs/404.html
docs/LICENSE-text.html
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docs/reference/Rplot001.png
docs/reference/addStatusByCutoff.html
docs/reference/addStatusByRank.html
docs/reference/autoBiokitAnalysis.html
docs/reference/autoEdgerComparison.html
docs/reference/autoLimmaComparison.html
docs/reference/autoPairwiseMatrixTest.html
docs/reference/contrastsFromDesign.html
docs/reference/countsToTmm.html
docs/reference/createPairwiseContrasts.html
docs/reference/defaultLogFc.html
docs/reference/designFromSampInfo.html
docs/reference/edgerDfFromContrasts.html
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docs/reference/fisherExactTest.html
docs/reference/gseaFromStats.html
docs/reference/gseaPlot.html
docs/reference/heatmapPlot.html
docs/reference/humanHallmarks.html
docs/reference/index.html
docs/reference/limmaDfFromContrasts.html
docs/reference/messageMappingInfo.html
docs/reference/nsTestPValue.html
docs/reference/nsTestT.html
docs/reference/oraFromStats.html
docs/reference/overRepresentationAnalysis.html
docs/reference/pairwiseMatrixTest.html
docs/reference/pcaPlot.html
docs/reference/sarsCovMat.html
docs/reference/sarsCovSampInfo.html
docs/reference/singleMatrixTest.html
docs/reference/splitFunMerge.html
docs/reference/translateMatrix.html
docs/reference/translateMatrixWithDb.html
docs/reference/translateSE.html
docs/reference/translateSEWithDb.html
docs/reference/validateMatrix.html
docs/reference/validateSampInfo.html
docs/reference/validateTranslatorDf.html
docs/reference/violinPlot.html
docs/reference/volcanoPlot.html
docs/sitemap.xml
man/addStatusByCutoff.Rd man/addStatusByRank.Rd man/autoEdgerComparison.Rd man/autoLimmaComparison.Rd man/autoPairwiseMatrixTest.Rd man/contrastsFromDesign.Rd man/countsToTmm.Rd man/createPairwiseContrasts.Rd man/defaultLogFc.Rd man/designFromSampInfo.Rd man/edgerDfFromContrasts.Rd
man/figures/logo.svg
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man/figures/unnamed-chunk-9-1.png
man/fisherExactTest.Rd man/gseaFromStats.Rd man/gseaPlot.Rd man/heatmapPlot.Rd man/humanHallmarks.Rd man/limmaDfFromContrasts.Rd man/messageMappingInfo.Rd man/nsTestPValue.Rd man/nsTestT.Rd man/oraFromStats.Rd man/overRepresentationAnalysis.Rd man/pairwiseMatrixTest.Rd man/pcaPlot.Rd man/sarsCovMat.Rd man/sarsCovSampInfo.Rd man/splitFunMerge.Rd man/translateMatrix.Rd man/translateMatrixWithDb.Rd man/validateMatrix.Rd man/validateSampInfo.Rd man/validateTranslatorDf.Rd man/violinPlot.Rd man/volcanoPlot.Rd
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tests/testthat.R tests/testthat/test_integrated_analysis.R tests/testthat/test_tmm_normalization.R tests/testthat/test_translate_matrix.R tests/testthat/test_validators.R
martingarrido/biokit documentation built on June 27, 2021, 2:21 a.m.