autoLimmaComparison: Automatic limma analysis
In martingarrido/biokit: Toolkit for the automatic analysis of omics data
Description
Usage
Arguments
Value
View source: R/limma_pairwise_comparison.R
Description
Perform the default limma analysis given a data matrix, a sample
information data frame and a grouping column.
Usage
1
autoLimmaComparison(mat, sampInfo, groupCol, removeColName = TRUE, ...)
Arguments
mat
Matrix with data to analyse.
sampInfo
sampInfo The sample information data frame.
groupCol
groupCol The column containing the grouping variable
removeColName
Remove column name from design matrix?
...
Other arguments passed to limmaDfFromContrasts.
Value
A data frame with the results in a tidy format.
martingarrido/biokit documentation built on June 27, 2021, 2:21 a.m.
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Description Usage Arguments Value
View source: R/limma_pairwise_comparison.R
Description
Perform the default limma analysis given a data matrix, a sample information data frame and a grouping column.
Usage
1 | autoLimmaComparison(mat, sampInfo, groupCol, removeColName = TRUE, ...)
|
Arguments
mat |
Matrix with data to analyse. |
sampInfo |
sampInfo The sample information data frame. |
groupCol |
groupCol The column containing the grouping variable |
removeColName |
Remove column name from design matrix? |
... |
Other arguments passed to limmaDfFromContrasts. |
Value
A data frame with the results in a tidy format.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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