heatmapPlot: Heatmap plot

Description Usage Arguments Value

View source: R/data_visualization.R

Description

Creates a heatmap representation of the more variable features in a matrix

Usage

1
heatmapPlot(mat, sampInfo, groupCol, scaleBy = "row", nTop = 100, ...)

Arguments

mat

The matrix to be plotted

sampInfo

The sample information data frame

groupCol

The column name of the grouping variable

scaleBy

character indicating if the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are "row", "column" and "none"

nTop

Number of features to be plotted after ranking them by the standard deviation

...

Arguments to be passed to pheatmap

Value

The phetamap plot


martingarrido/biokit documentation built on June 27, 2021, 2:21 a.m.