gseaFromStats: Gene set enrichment analysis from statistical results

Description Usage Arguments Value

View source: R/functional_analysis.R

Description

Gene set enrichment analysis from statistical results

Usage

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gseaFromStats(
  df,
  funCatList,
  rankCol,
  featCol = "feature",
  splitCol = "comparison",
  seed = 149,
  nPerm = 1000,
  ...
)

Arguments

df

Data frame with results to analyze.

funCatList

A list of character vectors with the functional categories to analyze.

rankCol

Column used to perform the pre-ranked gsea analysis.

featCol

Column used to name the rankCol values.

seed

Seed used to avoid reproducibility problems between runs.

...

Rest of arguments passed to fgseaSimple.

Value

A tidy data frame with the results.


martingarrido/biokit documentation built on June 27, 2021, 2:21 a.m.