gseaFromStats: Gene set enrichment analysis from statistical results

In martingarrido/biokit: Toolkit for the automatic analysis of omics data

Description

Gene set enrichment analysis from statistical results

Usage

gseaFromStats(
  df,
  funCatList,
  rankCol,
  featCol = "feature",
  splitCol = "comparison",
  seed = 149,
  nPerm = 1000,
  ...
)

Arguments

df	Data frame with results to analyze.
funCatList	A list of character vectors with the functional categories to analyze.
rankCol	Column used to perform the pre-ranked gsea analysis.
featCol	Column used to name the rankCol values.
seed	Seed used to avoid reproducibility problems between runs.
...	Rest of arguments passed to fgseaSimple.

Value

A tidy data frame with the results.

martingarrido/biokit documentation built on June 27, 2021, 2:21 a.m.