autoEdgerComparison: Automatic edgeR analysis from counts

In martingarrido/biokit: Toolkit for the automatic analysis of omics data

Description

Perform the default edgeR analysis given a count matrix, a sample information data frame and a grouping column.

Usage

autoEdgerComparison(
  counts,
  sampInfo,
  groupCol,
  removeColName = TRUE,
  filterByExpr = FALSE,
  ...
)

Arguments

counts	The count matrix to analyze.
sampInfo	sampInfo The sample information data frame.
groupCol	groupCol The column containing the grouping variable
removeColName	Remove column name from design matrix?
filterByExpr	Apply filterByExpr?
...	Other arguments passed to edgerDfFromContrasts.

Value

A data frame with the results in a tidy format.

martingarrido/biokit documentation built on June 27, 2021, 2:21 a.m.