mssumstats_old: Takes output from microsimr or an empirical microsatellite...

In mastoffel/sealABC: useful functions for the abc pinniped analysis

Description

Takes output from microsimr or an empirical microsatellite dataset and outputs summary statistics

Usage

mssumstats_old(simd_data, type = c("microsimr", "microsats"), by_pop = NULL,
  start_geno = NULL, data_type = c("simulated", "empirical"),
  rarefaction = FALSE, nsamp = NULL, nloc = NULL, nboot = 1000)

Arguments

simd_data	output from microsimr
type	"microsimr" for microsimr output, "microsats" for allelic microsatellite format
by_pop	name of population variable. If specified, all summary statistics will be calculated within populations
start_geno	integer, specifying the first column with genotypes. If now specified, all column are expected to be genotypes
data_type	if "empirical", the mratio will be calculated differently, see ?m_ratio
rarefaction	if TRUE, calculates mean and sd number of alleles as mean of n_samp individuals and n_loc loci over n_boot bootstraps
nsamp	number of samples to subssample
nloc	number of loci to subsample
nboot	number of bootstraps

Examples

data(microsimr_data)
mssumstats(microsimr_data)

data(microsat_data)

mastoffel/sealABC documentation built on May 21, 2019, 12:43 p.m.