Peak_selection_FDR: Peak selection FDR algorithm for internal use

In mathiaskalxdorf/IceR: Requantification of label-free DDA proteomics data pre-analyzed by MaxQuant.

Peak selection FDR algorithm for internal use

Description

Peak selection FDR algorithm for internal use

Usage

Peak_selection_FDR(
  num_features = 500,
  features,
  samples,
  peaks,
  path_to_features,
  peak_quant,
  feature_with_background_intensity,
  peak_selected,
  delta_mz,
  delta_rt,
  peak_min_ion_count,
  num_peaks_store,
  alignment_scores_cutoff,
  n_cores,
  peak_decision,
  Alignment_scoring,
  seed = 110519,
  plot = T
)

Arguments

num_features	num_features
features	features
samples	samples
peaks	peaks
path_to_features	path_to_features
peak_quant	peak_quant
feature_with_background_intensity	feature_with_background_intensity
peak_selected	peak_selected
delta_mz	delta_mz
delta_rt	delta_rt
peak_min_ion_count	peak_min_ion_count
num_peaks_store	num_peaks_store
alignment_scores_cutoff	alignment_scores_cutoff
n_cores	n_cores
peak_decision	peak_decision
Alignment_scoring	Alignment_scoring
seed	seed
plot	plot

Details

Peak selection FDR algorithm for internal use

mathiaskalxdorf/IceR documentation built on Aug. 1, 2022, 8:03 a.m.