convert_rawTIMS: Extract MS1-spectra from raw TIMS-ToF Pro data
In mathiaskalxdorf/IceR: Requantification of label-free DDA proteomics data pre-analyzed by MaxQuant.
View source: R/Feature_alignment_requantification.R
convert_rawTIMS R Documentation
Extract MS1-spectra from raw TIMS-ToF Pro data
Description
Extract MS1-spectra from raw TIMS-ToF Pro data
Usage
convert_rawTIMS(path_to_raw = NULL)
Arguments
path_to_raw
Path to folder containing d-files
Details
Convert MS1 spectra with TIMS information in raw files of Bruker TIMS-ToF Pro Mass Spectrometers into tables containing m/z, RT, inverse ion mobility and intensity information per ion. This process is currently very slow and can take several days even for a small data set. It also requires enough space on the home drive of the PC as well as at least 50 Gb of memory.
Value
Resulting ion tables are stored in a sub-directory (all_ion_lists) of the raw folder as .RData files
mathiaskalxdorf/IceR documentation built on Aug. 1, 2022, 8:03 a.m.
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View source: R/Feature_alignment_requantification.R
| convert_rawTIMS | R Documentation |
Extract MS1-spectra from raw TIMS-ToF Pro data
Description
Extract MS1-spectra from raw TIMS-ToF Pro data
Usage
convert_rawTIMS(path_to_raw = NULL)
Arguments
path_to_raw |
Path to folder containing d-files |
Details
Convert MS1 spectra with TIMS information in raw files of Bruker TIMS-ToF Pro Mass Spectrometers into tables containing m/z, RT, inverse ion mobility and intensity information per ion. This process is currently very slow and can take several days even for a small data set. It also requires enough space on the home drive of the PC as well as at least 50 Gb of memory.
Value
Resulting ion tables are stored in a sub-directory (all_ion_lists) of the raw folder as .RData files
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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