countMersCertainFirstFive: Compute Vector of counts for first five kinds of kmers

In mathornton01/Genomic-DFT-Yin-R: Fourier Analysis for Genomic Signals

Description

Generates a vector of counts (or frequencies) for the first five k-mers (ie. 1-mers, 2-mers, ..., 5-mers) and returns the vector concatenated together.

Usage

countMersCertainFirstFive(genomicString, freq = FALSE)

Arguments

genomicString	The character string version of the genomic signal which the user wishes to produce the kmer vector for.
freq	Whether the user would like a vector of raw counts back or if a vector of relative frequencies.

Value

a 1364 length vector containing counts/frequencies for first five mers

Examples

countMersCertainFirstFive(sarscvmay[1,]$sequences,FALSE)

mathornton01/Genomic-DFT-Yin-R documentation built on Dec. 21, 2021, 2:52 p.m.