getOptimal2DStrategy: Determine Optimal 2D encoding
In mathornton01/Genomic-DFT-Yin-R: Fourier Analysis for Genomic Signals
Description
Usage
Arguments
Value
Examples
View source: R/Yin-DFT-Distances-R.r
Description
Uses the ensemble of strings provided by the user as a list of genomic
signals and determines the optimal encoding strategy by the algorithim
proposed in Yin and Yau 2015, where the distance from A,C concentration
and A,G concentration to one-half are used to determine which encoding will
provide the best balance among all the possible encodings.
Usage
1
getOptimal2DStrategy(stringGenomes)
Arguments
stringGenomes
A list of strings representing genomic signals
Value
A character vector containing the name of the optimal strategy, either
'AC' or 'AG'.
Examples
1
2
getOptimal2DStrategy(list('ACCCTTAACCAAGGAGGGAGAGTTTCCCCGGGGGAGG',
'CCCCCCACACAAACCCTTGGGGAAAACCCGGAAGGCCCCCC'));
mathornton01/Genomic-DFT-Yin-R documentation built on Dec. 21, 2021, 2:52 p.m.
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Description Usage Arguments Value Examples
View source: R/Yin-DFT-Distances-R.r
Description
Uses the ensemble of strings provided by the user as a list of genomic signals and determines the optimal encoding strategy by the algorithim proposed in Yin and Yau 2015, where the distance from A,C concentration and A,G concentration to one-half are used to determine which encoding will provide the best balance among all the possible encodings.
Usage
1 | getOptimal2DStrategy(stringGenomes)
|
Arguments
stringGenomes |
A list of strings representing genomic signals |
Value
A character vector containing the name of the optimal strategy, either 'AC' or 'AG'.
Examples
1 2 | getOptimal2DStrategy(list('ACCCTTAACCAAGGAGGGAGAGTTTCCCCGGGGGAGG',
'CCCCCCACACAAACCCTTGGGGAAAACCCGGAAGGCCCCCC'));
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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