dev/scripts/myCAI.R
In maxconway/metabex: Metabolic Model Explorer
# My take on CAI
library(stringr)
library(genomes)
# Using functions pulled from CAI_alaSharp, we pull two tables.
ftp <- readNCBIftp('Geobacter')
ftpURL <- urlParserftoTONCBI(ftp$ftp[7])
anngenes <- getAnnotation(ftpURL)
DNA <- getDNA(ftpURL)
CAIs <- getCAIs(DNA,anngenes)
maxconway/metabex documentation built on May 21, 2019, 1:39 p.m.
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# My take on CAI
library(stringr)
library(genomes)
# Using functions pulled from CAI_alaSharp, we pull two tables.
ftp <- readNCBIftp('Geobacter')
ftpURL <- urlParserftoTONCBI(ftp$ftp[7])
anngenes <- getAnnotation(ftpURL)
DNA <- getDNA(ftpURL)
CAIs <- getCAIs(DNA,anngenes)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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