plot_cluster_profile_heatmap: Plot function that display a heatmap of channels intensities...

In maximemeylan/Excyte: Exhaustive eXploration of CYTometry data

Description

Plot function that display a heatmap of channels intensities for each phenograph cluster

Usage

plot_cluster_profile_heatmap(
  phenograph_obj,
  palette = "default",
  channels_order = NULL,
  memberships_order = NULL,
  display_marker_names = T,
  show_perc = T,
  cut_top_99th = T,
  ...
)

Arguments

phenograph_obj	list containing result of phenograph clustering and processed fcs
palette	vector of colors to be used
channels_order	vector of ordered channels names
memberships_order	vector of ordered memberships id
display_marker_names	boolean indicating if markers names should be displayed after the channel name
show_perc	boolean indicating if percentages for each cluster should be displayed
cut_top_99th	boolean value indicating if the top 1 percent should be remove to compute scaling
...	arguments to be passed to pheatmap

maximemeylan/Excyte documentation built on Nov. 10, 2020, 9:06 p.m.