plot_cluster_profile_heatmap: Plot function that display a heatmap of channels intensities...

Description Usage Arguments

View source: R/plot_excyte.R

Description

Plot function that display a heatmap of channels intensities for each phenograph cluster

Usage

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plot_cluster_profile_heatmap(
  phenograph_obj,
  palette = "default",
  channels_order = NULL,
  memberships_order = NULL,
  display_marker_names = T,
  show_perc = T,
  cut_top_99th = T,
  ...
)

Arguments

phenograph_obj

list containing result of phenograph clustering and processed fcs

palette

vector of colors to be used

channels_order

vector of ordered channels names

memberships_order

vector of ordered memberships id

display_marker_names

boolean indicating if markers names should be displayed after the channel name

show_perc

boolean indicating if percentages for each cluster should be displayed

cut_top_99th

boolean value indicating if the top 1 percent should be remove to compute scaling

...

arguments to be passed to pheatmap


maximemeylan/Excyte documentation built on Nov. 10, 2020, 9:06 p.m.