plot_excyte: Master function to call all available plot functions

In maximemeylan/Excyte: Exhaustive eXploration of CYTometry data

Description

Master function to call all available plot functions

Usage

plot_excyte(
  excyte_obj,
  cut_top_99th = T,
  show_perc = T,
  alpha = 0.5,
  threshold = "tertile",
  title = "both"
)

Arguments

excyte_obj	list of object obtained from an initial run with the excyte pipeline
cut_top_99th	boolean value indicating if the top 1 percent should be remove to compute scaling
show_perc	boolean indicating if percentages for each cluster should be displayed
alpha	numeric indicating the transparency level when plotting the umap

maximemeylan/Excyte documentation built on Nov. 10, 2020, 9:06 p.m.