pre_process_fcs: Extract and aggreagte fluorescence intensity matrixx of FCS...

In maximemeylan/Excyte: Exhaustive eXploration of CYTometry data

Description

Extract and aggreagte fluorescence intensity matrixx of FCS files. Perfom logicle transformation and scaling, downsampling if necessary

Usage

pre_process_fcs(fcs_dir, downsampling = NULL, rescale_all = c(0, 4.5))

Arguments

fcs_dir	directory or vector containing fcs files to be used
downsampling	number of event to randomly select from each fcs, if the number of events request is bigger than the number of event in the fcs, all event are selected
rescale_all	vector of two values indicating the range of the values to scale between

Value

a list containing the normalized aggregated dataframe and all_channels

maximemeylan/Excyte documentation built on Nov. 10, 2020, 9:06 p.m.