plot_ridge: Plot function to display channels intensities according to...

In maximemeylan/Excyte: Exhaustive eXploration of CYTometry data

Description

Plot function to display channels intensities according to event memberships

Usage

plot_ridge(
  phenograph_obj,
  channels = "all",
  cluster_to_use = "all",
  type = c("channels", "clusters")[1],
  threshold = c("median", "tertile", "quartile", NA)[1],
  downsampling = NULL,
  limits = c(-0.2, 4.3),
  channel_names = c("channel", "marker", "both")[3]
)

Arguments

phenograph_obj	list containing result of phenograph clustering and processed fcs
channels	vector of channels to use, default uses all channels
cluster_to_use	vector of cluster to use, default uses all clusters
type	character, plot selected channels for each clusters (type="clusters") or selected clusters for each channel (type="channels")
threshold	character, draw the median, tertile or quartile
downsampling	numeric indicating the number of events to plot
channel_names	character, edit channels names accordingly

maximemeylan/Excyte documentation built on Nov. 10, 2020, 9:06 p.m.