Man pages for maxmeyl/Excyte
Exhaustive eXploration of CYTometry data
| annotate_clusters | Provide annotations for each cluster, based on intensity... |
| compute_phenograph | Compute phenograph membership for each event |
| compute_umap | Compute Umap coordinates for each event |
| plot_cluster_profile_heatmap | Plot function that display a heatmap of channels intensities... |
| plot_excyte | Master function to call all available plot functions |
| plot_phenograph | Plot function that display phenograph memberships for each... |
| plot_ridge | Plot function to display channels intensities according to... |
| plot_umap | Plot function that display a Umap of scaled intensities for... |
| pre_process_fcs | Extract and aggreagte fluorescence intensity matrixx of FCS... |
| query_extract | Query an aggregated dataframe to subset requested channels |
| rerun_excyte | Rerun the excyte pipeline on selected phenograph clusters |
| run_excyte | Master function to run preprocessing,phenograph clustering... |
