pre_process_fcs: Extract and aggreagte fluorescence intensity matrixx of FCS...

Description Usage Arguments Value

View source: R/pre_process_fcs.R

Description

Extract and aggreagte fluorescence intensity matrixx of FCS files. Perfom logicle transformation and scaling, downsampling if necessary

Usage

1
pre_process_fcs(fcs_dir, downsampling = NULL, rescale_all = c(0, 4.5))

Arguments

fcs_dir

directory or vector containing fcs files to be used

downsampling

number of event to randomly select from each fcs, if the number of events request is bigger than the number of event in the fcs, all event are selected

rescale_all

vector of two values indicating the range of the values to scale between

Value

a list containing the normalized aggregated dataframe and all_channels


maxmeyl/Excyte documentation built on Nov. 17, 2020, 8:09 a.m.