plot_umap: Plot function that display a Umap of scaled intensities for...

Description Usage Arguments

View source: R/plot_excyte.R

Description

Plot function that display a Umap of scaled intensities for event

Usage

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plot_umap(
  umap_2D,
  processed_fcs_df,
  channels = c("channels_used", "all", "with_desc")[1],
  cut_top_99th = T,
  title = c("both", "marker", "channel")[1],
  alpha = 0.5
)

Arguments

umap_2D

matrix detailing coordinates of each event on the umap

processed_fcs_df

dataframe of processed intensities for each event and informations of channel used as attribute

channels

vector of channels to select. Can be "all" to select all channels, "with_desc" to select channels with a marker description or a vector a channels

cut_top_99th

boolean value indicating if the top 1 percent should be removed to compute color scaling

alpha

numeric indicating the transparency level when plotting the umap


maxmeyl/Excyte documentation built on Nov. 17, 2020, 8:09 a.m.