compute_phenograph: Compute phenograph membership for each event

Description Usage Arguments

View source: R/run_excyte.R

Description

Compute phenograph membership for each event

Usage

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compute_phenograph(
  processed_fcs_obj,
  channels = c("all", "with_desc")[1],
  k = 30
)

Arguments

processed_fcs_obj

list containing a datraframe of processed intensities for each event and informations of channel used

channels

vector containing channels to select. Can be "all" to select all channels, "with_desc" to select channels with a marker description or a vector a channels.

k

numeric indicating the number of neighbor for phenograph and umap computation


maxmeyl/Excyte documentation built on Nov. 17, 2020, 8:09 a.m.