API for mbanf/MERIT
MastEr Regulator Inference Tool
| Global functions | |
|---|---|
| annotate_links_with_treatments_and_tissues | Man page Source code |
| compute_ensemble_regression_with_montecarlo_based_stability_sele | Man page Source code |
| compute_linearRegressionWithStabilitySelection_based_GRN | Source code |
| compute_randomforest_based_GRN | Source code |
| do_master_regulator_hierarchy_inference | Man page Source code Source code |
| do_treatment_filtering_all_links | Source code |
| do_treatment_filtering_single_link | Source code |
| evaluate_tissues_per_treatment | Source code |
| extract_TFBS_positions | Source code Source code Source code Source code |
| format_results | Man page Source code Source code |
| generate_ensemble_grn_based_on_stability_selection | Source code Source code |
| grn_dataframe_to_matrix | Source code Source code |
| identify_bottom_tier_masterRegulators | Source code Source code |
| identify_regulatory_hierachy | Source code Source code |
| install_and_load_libraries | Man page Source code Source code |
| load_datasets | Man page Source code Source code |
| load_lead_support_grn | Man page Source code |
| matrix_to_dataframe | Source code Source code |
| perform_treatment_and_tissue_filtering | Source code |
| plot_heatmap | Source code |
| precompute_and_store_diffExp_and_foldchange_matrices | Source code |
| prepare | Source code Source code |
| run_MERIT | Man page Source code Source code |
| run_comparative_evaluation | Source code Source code |
| run_grn_stability_selection | Source code Source code |
| save_pheatmap_pdf | Source code Source code |
| stabilitySelection | Man page Source code Source code |
| stabilitySelectionProcedure | Source code |
| transcriptionFactorBindingInference | Man page Source code |
| transcriptionFactorBindingInference_with_TFBStools | Man page Source code |
| utils | Source code |
