transcriptionFactorBindingInference_with_TFBStools: Step 2 - Transcription factor direct target promoter binding...

In mbanf/MERIT: MastEr Regulator Inference Tool

Description

Step 2 - Transcription factor direct target promoter binding based filtering of gene regulatory link predictions

Usage

transcriptionFactorBindingInference_with_TFBStools(m.grn,
  file.TF_to_Motif_IDs = "", file.TFBS_motifs = "",
  file.promoterSeq = "", file.geneSeq = "", th.pre_tss = 1000,
  th.post_tss = 200, th.min.score.motif = "80%",
  genome_nucleotide_distribution = c(0.3253439, 0.1746561, 0.1746561,
  0.3253439), th.pval.known_motifs = 0.05, n.cpus = 2, b.load = "no")

Arguments

m.grn

gene regulatory network

Value

DNA binding based grn and p-values, filtered lead-support grn

Examples

install_and_load_libraries()

mbanf/MERIT documentation built on June 16, 2021, 1:07 p.m.