annotate_links_with_treatments_and_tissues: Step 3 - Context specific annotation and filtering of gene...

In mbanf/MERIT: MastEr Regulator Inference Tool

Description

This function filter...

Usage

annotate_links_with_treatments_and_tissues(m.lead_support_w_motif.grn,
  m.pvalue_differentialExpression, df.experiment_condition_annotation,
  tb.condition_treatments, tb.condition_tissues, v.conditionGroups,
  v.tissueGroups, th.diffexp = 0.05, th.pval.treatment = 0.05,
  th.pval.tissue = 0.05, th.min.samples = 1,
  s.multipleTestCorrection = "none", b.load = "no")

Arguments

m.grn	= m.grn,
l.grn_subnetworks	= l.grn_subnetworks,
th.min_number_targets	= 2,
th.min_number_MR_targets	= 2,
th.pval	= 0.05

Value

DNA binding and treatment filtered lead-support grn, condition specific subnetworks, statistics

mbanf/MERIT documentation built on June 16, 2021, 1:07 p.m.